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Probabilistic Models for Bacterial Taxonomy
Authors:M Gyllenberg  T Koski
Institution:Department of Mathematics, University of Turku, 20014 Turku, Finland;Department of Mathematics, Linköping Institute of Technology, 58183 Linköping, Sweden
Abstract:We give a survey of different partitioning methods that have been applied to bacterial taxonomy. We introduce a theoretical framework, which makes it possible to treat the various models in a unified way. The key concepts of our approach are prediction and storing of microbiological information in a Bayesian forecasting setting. We show that there is a close connection between classification and probabilistic identification and that, in fact, our approach ties these two concepts together in a coherent way.
Keywords:Clustering  Bayesian statistics  Predictive inference  Rules of succession  Species sampling  Machine learning  Exchangeability  Multivariate Bernoulli distributions
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